University Of Texas M.D. Anderson Houston , TX 77020
Posted 2 weeks ago
The primary purpose of the Associate Data Scientist is to leverage the capabilities of next-generation sequencing data to drive forward the discovery and development of novel therapeutics for cancer patients. This crucial role is centered on analyzing and interpreting intricate genetic information at the single-cell level to identify unique biomarkers and understand tumor heterogeneity. By crafting advanced computational tools and algorithms, the Associate Data Scientist will play a crucial part in accelerating scientific discoveries and contributing to the development of new therapies and diagnostics that can transform patient care and health outcomes.
Led by Prof. Bissan Al-Lazikani, Director of Therapeutics Data Science, the intelligent and ever-learning A3D3a platform is part of the new initiative in Therapeutics Data Science and part of our ambitious Institute for Data Science in Oncology at MD Anderson. A3D3a will accelerate the discovery and impact of novel therapies for cancer by enabling novel opportunities for optimized therapies for patients with a focus on rare and hard-to-treat cancers through the development of novel machine learning and AI technologies.
JOB SPECIFIC COMPETENCIES
Carry out preparation, clean-up, and quality control of biological data, including scRNA-Seq, scATAC-Seq, Spatial transcriptomics and/or other multi-dimensional omic data modalities,
Develop and maintain pipelines for bioinformatics and statistical analyses of aforementioned data types; activities to include handling raw data, evaluating outputs, optimizing parameters and summarizing findings.
Collaborate with interdisciplinary teams to design experiments and analyze data from various single cell platforms.
Maintain knowledge of latest bioinformatic approaches and variety sequencing technologies, especially in single-cell context.
Present results at multidisciplinary project meetings.
Produce output for scientific publications and co-author said publications.
Prepare written reports, manuscripts, and grant applications with investigators.
Work closely with the team and collaborators to discover novel therapeutic opportunities for cancer patients.
Expected Skills
Deep knowledge of bioinformatics tools and their implementation as part of pipelines, particularly for scRNA-Seq, scATAC-Seq, Spatial transcriptomics and/or other multi-dimensional omic data modalities.
Demonstrated experience and understanding of genomic technologies and analysis of data generated.
Analyzing and interpreting outputs to identify insights and hypotheses from data.
Understanding of essential statistical methodologies required for bioinformatics analyses.
Addressing challenges in bioinformatics as well as mitigation strategies such as bias, batch correction, etc.
Utilizing High Performance Computing to run large-scale analyses.
Unix, R, Python or other scripting/programming languages.
Other duties as assigned.
COMPETENCIES
Working Conditions
Laboratory environment
This position requires:
Working in Office Environment
____No
_X Yes
Working in Patient Care Unit (e.g., Nursing unit; outpatient clinic)
X No
____ Yes
Exposure to human/animal blood, body fluids, or tissues
__X__No
__ Yes
Exposure to harmful chemicals
__X__No
___ Yes
Exposure to radiation
X No
____ Yes
Physical Demands
Indicate the time required to do each of the following physical demands:
Time Spent
Never
0%
Occasionally
1-33%
Frequently
34-66%
Continuously
67-100%
Standing
X
Walking
X
Sitting
X
Reaching
X
Lifting/Carrying
Up to 10 lbs.
X
10lbs to 50 lbs.
X
More than 50 lbs.
X
Pushing/Pulling
Up to 10 lbs.
X
10lbs to 50 lbs.
X
More than 50 lbs.
X
Use computer/keyboard
X
EDUCATION:
Required: Bachelor's degree in Biomedical Engineering, Electrical Engineering, Computer Engineering, Physics, Applied Mathematics, Statistics, Computer Science, Computational Biology, or related field.
Preferred: PhD in Biomedical Engineering, Electrical Engineering, Computer Engineering, Physics, Applied Mathematics, Statistics, Computer Science, Computational Biology, or related field.
EXPERIENCE:
Required: Two years experience in scientific software development/analysis.
Preferred: Experience with single cell sequencing analysis.
It is the policy of The University of Texas MD Anderson Cancer Center to provide equal employment opportunity without regard to race, color, religion, age, national origin, sex, gender, sexual orientation, gender identity/expression, disability, protected veteran status, genetic information, or any other basis protected by institutional policy or by federal, state or local laws unless such distinction is required by law. http://www.mdanderson.org/about-us/legal-and-policy/legal-statements/eeo-affirmative-action.html
Additional Information
Requisition ID: 166297
Employment Status: Full-Time
Employee Status: Regular
Work Week: Days
Minimum Salary: US Dollar (USD) 85,000
Midpoint Salary: US Dollar (USD) 106,500
Maximum Salary : US Dollar (USD) 128,000
FLSA: exempt and not eligible for overtime pay
Fund Type: Soft
Work Location: Hybrid Onsite/Remote
Pivotal Position: Yes
Referral Bonus Available?: Yes
Relocation Assistance Available?: Yes
Science Jobs: Yes
University Of Texas M.D. Anderson